CI #4073
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
54s
pyright
19s
build-docs
/
build
1m 39s
check-docs
43s
check-subsample-config-schema
43s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
0s
Annotations
23 warnings
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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test (python=3.9 biopython=1.82 numpy=latest)
Failed to save: Failed to FinalizeCacheEntryUpload: Received non-retryable error: Failed request: (404) Not Found: cache entry not found
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test (python=3.10 biopython=1.80 numpy=1.26.4)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-ad23c5a-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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test (python=3.11 biopython=1.85 numpy=latest)
Failed to save: Unable to reserve cache with key 2025-11-19-linux-64-augur-args-915460d-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
|
192 KB |
sha256:f576a5a52249e15658b4b2d8fc46aa56c22298e564693e4d8fe912e5d4921b02
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output-avian-flu
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108 KB |
sha256:736bf9895356069a94bb90991d36f00a061dad9378f3c77512ed7c95c4927a09
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output-dengue
|
436 KB |
sha256:6abb21bfdf0cc162b7540496e07fbd008311d37c1500c2550728ba9eb4c93795
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output-lassa
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369 KB |
sha256:40e912d876c5e01ea1d94d949f137cea5b4c265bf8f212c4b5528b995efcfc29
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output-measles
|
3.91 MB |
sha256:2c1b5aafd22268f8ebabbb9c3f2793a2ddb92e23312cdf799323f9a9c304ae7b
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output-mpox
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23.1 MB |
sha256:0656908de15fc22d8e9d39570a52007a6e7ebee1ee118683c40f6b6fe1dd7c83
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output-mumps
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379 KB |
sha256:7e2666ea1e9bacf65aeafd7daef6100eed98410e93aa0d62f2c41f95611d9814
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output-ncov
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720 KB |
sha256:40e516a0600dba305b2bee4a2f04e6029c229047174d8aefbaebaa5470815c1a
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output-oropouche
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589 KB |
sha256:506e9bc54b10133b3c386aca50cea9e41c4946dbc35c4a5705e4c93ad651e04a
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output-rabies
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5.3 MB |
sha256:10d3b4b410558a7d7165893321d8f87b04cd4d10b86617cff2f0d441ea4309fa
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output-rsv
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661 KB |
sha256:32cc4271e03efb78392c2a5765f3c9f0764356bc96850cb4e73914221858ae88
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output-seasonal-cov
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2.49 MB |
sha256:69dc9478978f45b91b366936b05a556a085106c7a851c74514f4e2c3b792d1c1
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output-seasonal-cov
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2.49 MB |
sha256:69dc9478978f45b91b366936b05a556a085106c7a851c74514f4e2c3b792d1c1
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output-seasonal-cov
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2.49 MB |
sha256:69dc9478978f45b91b366936b05a556a085106c7a851c74514f4e2c3b792d1c1
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output-seasonal-cov
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2.49 MB |
sha256:69dc9478978f45b91b366936b05a556a085106c7a851c74514f4e2c3b792d1c1
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output-seasonal-flu
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60.3 KB |
sha256:57b23b44c1a63ec2b57d7aac31bc5d15be1b42c53becf6c0450484466f83cb89
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output-vcf-input-tutorial
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5.03 MB |
sha256:951af822474e22bb3251c796c7752909c068ba3c197479a96232ae274637bbd5
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output-wnv
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242 KB |
sha256:2d8d5cc0d980f53be91795342b1af198f74a364ed175c6df4364af1615c67f5c
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output-yellow-fever
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2.13 MB |
sha256:2d4a863d06ba6e09d945a5c0197144802bc6073b14ce4e0857fc2180fdbb747c
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output-zika
|
838 KB |
sha256:c71bd2346bf4e2dc719628f60bb1c03623c08f2f0de52e2a2a0a71c6d0e175af
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output-zika
|
838 KB |
sha256:c71bd2346bf4e2dc719628f60bb1c03623c08f2f0de52e2a2a0a71c6d0e175af
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output-zika
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838 KB |
sha256:c71bd2346bf4e2dc719628f60bb1c03623c08f2f0de52e2a2a0a71c6d0e175af
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