CI #4076
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
52s
pyright
18s
build-docs
/
build
1m 38s
check-docs
42s
check-subsample-config-schema
43s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
17s
rebuild-docker-image
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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192 KB |
sha256:5aa0b3140e34f87569ce51c33cca8db2e0a455028bfedc513b572fee487cf9ff
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output-avian-flu
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108 KB |
sha256:31c0fcb25ae3992700ec347cd4e82dd42658bb183ebd5879829cfac31bd66611
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output-dengue
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436 KB |
sha256:e5a5f23769175e11731d2234cd1cea4969813a2b12bb8f4bbd4fcf593ba9c3b2
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output-lassa
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369 KB |
sha256:c3c915a5df6f497d257a310e2ecb4265431133ee93c7a3840ecf2b169695416d
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output-measles
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3.89 MB |
sha256:bbe21c1918ee237aa578536847f8ca7680c014458e64e8e80ae9030c3f0bfbdd
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output-mpox
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23.1 MB |
sha256:8da8fef3c02b283c55ed16002213aa065b17cb5a0cb80b2802c030288d9572dc
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output-mumps
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378 KB |
sha256:b68c8c7ce338be9a133e405dc291ee5b0ee8114ceb7a5fc90b8173cdf23e5856
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output-ncov
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714 KB |
sha256:fed9170daa514f9b63a6969cad1f52627c2ac0aedb805522c94bf2f315882df9
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output-oropouche
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588 KB |
sha256:023038821df0e7a0c0c30e0034673883b1028a2e28f3c667d12ed9878b92e345
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output-rabies
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5.3 MB |
sha256:5ff1977e56043834ee09543f5c9a56a5d3bb61ced519dbbcadf5cc027e84d7f4
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output-rsv
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661 KB |
sha256:343f8fa55c5a435a9abe5c5d40e324fe58a51f7b01d4995db7ddc93e306fca66
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output-seasonal-cov
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2.5 MB |
sha256:b41703b02beda66f970e6f58b6050a02c8f558f509816bdfda7d89a14e43e500
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output-seasonal-flu
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60.3 KB |
sha256:c08120ed7d5753231444a08f2217bacabda2c0b4352d7bcc0a99d39b4eba26f2
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output-vcf-input-tutorial
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5.03 MB |
sha256:d0a05e5700645f0080c807f8718c72cb5b469a48b562eafbc109ff1fca0b0bdd
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output-wnv
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240 KB |
sha256:f958f5f7aefc9dd18f499c30a71c19c41c822a87072a9765a73420bf00ae9816
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output-yellow-fever
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2.13 MB |
sha256:12bf0b5ff68d67e5f72092c5a530513708b19dbce5fbb209cec5b51b806a9177
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output-zika
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838 KB |
sha256:e21fa170c1e1f47fa1c54c0c1484b81da12fb56f0d7d374a2eb2dd8aaa9dc9e6
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