Bump actions/checkout from 5 to 6 (#1928) #4081
victorlinci.yaml
on: push
Matrix: pytest-cram
mypy
1m 0s
pyright
17s
build-docs
/
build
1m 30s
check-docs
45s
check-subsample-config-schema
43s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-26-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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192 KB |
sha256:1f0c8fd7ba13e99df9f7a18b5e933cbbcd023d8efd40364fde1239b1c40ba3a1
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output-avian-flu
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108 KB |
sha256:ca0e659e86ae9492ce49a433cb3543575625ef06c2bd53db7f70dbf6dc6596c0
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output-dengue
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436 KB |
sha256:ee5e2aa533e3386c361c41690a314793c42fafe583e2f1308f9a00e85ab7a4f5
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output-lassa
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370 KB |
sha256:8fa2eba4a33eb46f9d70cf023e9edd70cfc700efcceae186c409a54ade88eaa4
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output-measles
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3.91 MB |
sha256:259dac35addaf29510915dea7aabea66cb1a510799ad1e7cdfc5f8c8aad35258
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output-mpox
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23.1 MB |
sha256:168ab13f8d10580a45cce1872423206d58722c320c08fe0c6213bfe2f079e49e
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output-mumps
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378 KB |
sha256:4cbdaa8070a6b6b4e68a6a5db5752300326d452cedb9ecbab5474f2ab804826a
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output-ncov
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717 KB |
sha256:e887ca2e09c5ef3ee3ccc44a4b6b3b7f1f57a96a607c9e8b7608f650dc899a43
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output-oropouche
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588 KB |
sha256:2cac4d1b1a272ee212037038566eb7cafef9abe3080f2a2f083d041b396821d1
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output-rabies
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5.3 MB |
sha256:1149bc559f9e83fb5cb16e0e71f9496f7e82ee9d264a548d37923584d908ec11
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output-rsv
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661 KB |
sha256:375066a58ce722e669551a33d6965dd7c004726c55842a233bdd36880351acf9
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output-seasonal-cov
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2.46 MB |
sha256:337069b387abcff1fdc338ea9b33719997d2bbe90e229d6aa1717f29084225d5
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output-seasonal-flu
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60.3 KB |
sha256:a87b9d1bbcec7d67870ea30f1c1bcc8d621a089108c9ef4047d7dbdcdcd7ee56
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output-vcf-input-tutorial
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5.03 MB |
sha256:2ac98db90e299c01a60fca4debdd10ed3d9a981d34e2ce5dc7ab96d39e9303f5
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output-wnv
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241 KB |
sha256:c3d3eac0b7717220dbfb51aec05ff7fa592f902895b8114e88dd0a5ad23e7beb
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output-yellow-fever
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2.13 MB |
sha256:9e2e035f922757106757790c55bff4a8d42ac5bd495be4e4ee81a8726dd8e00d
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output-zika
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837 KB |
sha256:4de54c3cb7b5a8dadfbe7a2f6a6c63c9b70ab361d1843c0123322a0cbb0b8425
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