CI #4089
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
56s
pyright
17s
build-docs
/
build
2m 8s
check-docs
48s
check-subsample-config-schema
42s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
18s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-12-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d6df64a7daa2aabff343db0cedcfa5c857144f3d198d758361a1c3dbb8ac0436, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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192 KB |
sha256:9354f28c75939bb07393563bf02cadafbe0fe0b9b244ec82e91e4fd2344fbe6c
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output-avian-flu
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108 KB |
sha256:807812e1eaa5370620a53b79a8c81f0c166da3c4ae357afffa9fe29cb88f2e9d
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output-dengue
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435 KB |
sha256:5e35725460c29880918d01a9dea4405606c8e5cb8719cfb33623924f48379eb5
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output-lassa
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369 KB |
sha256:40cc0abf80f7262db6e40fa27efc3c009d7f14be1cadc5fff1c565d2182ca6f7
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output-measles
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3.91 MB |
sha256:2d870eb5f0dc89bf79cca8103d8e9d87ec47a1a6e51daa7d16e7bf2687a2cf51
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output-mpox
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23.1 MB |
sha256:e5fdd0bac68327079a34e57b8a1b56be1f72c16253d521d3b1f5be9b0899792b
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output-mumps
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379 KB |
sha256:dbe363317b940624edef37d647095768504fc3803a3e8747978bd6d18a64baf1
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output-ncov
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716 KB |
sha256:0c5ad1fa05ed7d50d3060ed82fe74b5cefe9e981ec60168533d9758899737fea
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output-oropouche
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588 KB |
sha256:83195c7d82ab6b55a2790d9c9380bc468332076645b879c319b2f7da033da848
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output-rabies
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5.3 MB |
sha256:fb4faf288a8b3f8aea3e87469ed21f4e9d35fb5cf2f5c38dacf90fd5764b0b14
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output-rsv
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661 KB |
sha256:6947750b185eb2208ca03c0443e0a194675835b43efe8be526ff4a7a8cf75aa6
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output-seasonal-cov
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2.48 MB |
sha256:321b07152a12222a2f4a2ecb7226eaa603752aa489323d7d914f65c44364393d
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output-seasonal-flu
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60.2 KB |
sha256:9dafa609bebc622e56b76cb8e3033dbbd07bde918013dd7ed858a89e1ea198c9
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output-vcf-input-tutorial
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5.03 MB |
sha256:452948412e37318f8b987f02cc39237e80ad5ccb0649e39229d2981150823773
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output-wnv
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241 KB |
sha256:e0cf5a5a8eb79ebbdd73463b36dda1fd3c5fef917621b2b679357a78908fc9df
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output-yellow-fever
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2.12 MB |
sha256:e78fa8e94027f388c64f480ec770ed0d8bb083158f49506e2e85da3beadeb356
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output-zika
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838 KB |
sha256:50083ac81d9647b04efad6eddd6360a4b87373c80452054cc4bb04d12492e1a4
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