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Fix broken link to influenza naming conventions #231

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Oct 10, 2024
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Fix broken link to influenza naming conventions #231

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2 changes: 1 addition & 1 deletion src/tutorials/creating-a-pathogen-repo/creating-an-ingest-workflow.rst
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Expand Up @@ -414,7 +414,7 @@ If you write a custom script that follows the same pattern, you can add your scr
curation pipeline before the final ``augur curate apply-record-annotations`` command.

A typical pathogen-specific step for curation is the standardization of strain names since pathogens usually have different naming conventions
(e.g. `influenza <https://www.cdc.gov/flu/about/viruses/types.htm>`_ vs `measles <https://www.cdc.gov/measles/php/laboratories/genetic-analysis.html#cdc_generic_section_3-guidelines-for-naming-measles-strains-or-sequences>`_).
(e.g. `influenza <https://www.cdc.gov/flu/about/viruses-types.html>`_ vs `measles <https://www.cdc.gov/measles/php/laboratories/genetic-analysis.html#cdc_generic_section_3-guidelines-for-naming-measles-strains-or-sequences>`_).
For example, we've added a step in the curation pipeline to normalize the strain names for the `Zika ingest workflow <https://github.com/nextstrain/zika/tree/main/ingest>`_.

1. We added a `custom Python script <https://github.com/nextstrain/zika/blob/a91e575bff38f154390c9eb11a44a89abf95a55b/ingest/bin/fix-zika-strain-names.py>`_
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