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@nextstrain-bot nextstrain-bot released this 05 Jun 23:09
3.7.1
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Nextclade 3.7.1

Warn if reference sequence does not match root sequence of the tree

When both a standalone reference sequence and Auspice tree containing .root.sequence.nuc are present, Nextclade will check that these are the same sequence. If not, a warning is emitted to stderr for Nextclade CLI and to browser's dev console for Nextclade Web. This is mostly useful for dataset authors, for debugging.

Fix error when selecting a CDS in genome annotation visualization in Nextclade Web

Nextclade sometimes displayed an error in the peptide view when switching CDS by clicking on annotation visualization. This has been fixed now.

Installation and usage

📚 Documentation: docs.nextstrain.org/projects/nextclade

🌍 Nextclade Web: clades.nextstrain.org

🖥️ Nextclade CLI:

  • 📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures.
  • 🐋 Docker images are available on DockerHub
  • 🐍 Conda package is available in bioconda channel.
Assets 9
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