Test dataset addition

data/community/org/user/dummy/CHANGELOG.md

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+## Unreleased
+
+Initial release for Nextclade v3!
+
+Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

data/community/org/user/dummy/README.md

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+# Nextclade dataset for "dummy1" based on reference "DU1MMY" (.ignore/files)
+
+
+## Dataset attributes
+
+| attribute            | value                                    |
+| -------------------- | ---------------------------------------- |
+| name                 | dummy1                                   |
+| refName              | DU1MMY                                   |
+| refAccession         | DU1MMY                                   |
+
+
+## Authors and contacts
+
+Source code: 
+
+Author1: 
+
+Author2: 
+
+## What is Nextclade dataset
+
+Read more about Nextclade datasets in Nextclade documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

data/community/org/user/dummy/genome_annotation.gff3

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+#DUMMY
+ref	dummy	region	1	120	.	+	.	ID=ref
+ref	dummy	CDS	1	15	.	+	0	Name=HA1;gene=HA1

data/community/org/user/dummy/pathogen.json

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+{
+  "attributes": {
+    "name": "dummy1",
+    "refAccession": "DU1MMY",
+    "refName": "DU1MMY"
+  },
+  "cdsOrderPreference": [
+    "HA1"
+  ],
+  "compatibility": {
+    "cli": "3.0.0-alpha.0",
+    "web": "3.0.0-alpha.0"
+  },
+  "defaultCds": "HA1",
+  "deprecated": false,
+  "enabled": true,
+  "experimental": true,
+  "files": {
+    "changelog": "CHANGELOG.md",
+    "examples": "sequences.fasta",
+    "genomeAnnotation": "genome_annotation.gff3",
+    "pathogenJson": "pathogen.json",
+    "readme": "README.md",
+    "reference": "reference.fasta",
+    "treeJson": "tree.json"
+  },
+  "meta": {
+    "bugs": "https://github.com/nextstrain/nextclade_data/issues",
+    "source code": "https://github.com/nextstrain/nextclade_data"
+  },
+  "schemaVersion": "3.0.0",
+  "version": {
+    "tag": "unreleased"
+  }
+}

data/community/org/user/dummy/reference.fasta

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+>Dummy1/Ref
+AAAAAAAAAAAAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG

data/community/org/user/dummy/sequences.fasta

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+>ref
+AAAAAAAAAAAAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>A
+GGAAAAAAAAAAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>A1
+GAAAAAAGAAAAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>B1
+AACCAACCAAAAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>B2
+AACCAACCAAAAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>C
+AACAGAAAAAAAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>BC1
+AACAAAAAAAGAAAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>BC2
+AACAAAAAAAGATAAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG
+>BC3
+AACAAAAAAAGATCAGTCGCTGATCGATCGGCTAGCTGCTCGATCGATCGGCTAGCTATTCATTTTCGATCTCCTCTCGCGATCGTATAGCTACGCATCGACTACTGCATCACTGACTTG

data/community/org/user/dummy/tree.json

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+{
+  "meta": {
+    "title": "Dummy nextclade reference tree",
+    "data_provenance": [
+      {
+        "name": "fictional data"
+      }
+    ]
+  },
+  "tree": {
+    "name": "NODE_0000000",
+    "node_attrs": {
+      "div": 0,
+      "clade_membership": {
+        "value": "unassigned"
+      }
+    },
+    "branch_attrs": {
+      "mutations": {
+        "nuc": []
+      }
+    },
+    "children": [
+      {
+        "name": "A",
+        "node_attrs": {
+          "div": 0.016666666666666666,
+          "clade_membership": {
+            "value": "unassigned"
+          }
+        },
+        "branch_attrs": {
+          "mutations": {
+            "nuc": [
+              "A1G",
+              "A2G"
+            ],
+            "HA1": [
+              "K1G"
+            ]
+          }
+        },
+        "children": []
+      },
+      {
+        "name": "NODE_0000001",
+        "node_attrs": {
+          "div": 0.008333333333333333,
+          "clade_membership": {
+            "value": "unassigned"
+          }
+        },
+        "branch_attrs": {
+          "mutations": {
+            "nuc": [
+              "A3C"
+            ],
+            "HA1": [
+              "K1N"
+            ]
+          }
+        },
+        "children": [
+          {
+            "name": "B",
+            "node_attrs": {
+              "div": 0.016666666666666666,
+              "clade_membership": {
+                "value": "unassigned"
+              }
+            },
+            "branch_attrs": {
+              "mutations": {
+                "nuc": [
+                  "A4C"
+                ],
+                "HA1": [
+                  "K2Q"
+                ]
+              }
+            },
+            "children": []
+          },
+          {
+            "name": "C",
+            "node_attrs": {
+              "div": 0.016666666666666666,
+              "clade_membership": {
+                "value": "unassigned"
+              }
+            },
+            "branch_attrs": {
+              "mutations": {
+                "nuc": [
+                  "A5G"
+                ],
+                "HA1": [
+                  "K2R"
+                ]
+              }
+            },
+            "children": []
+          }
+        ]
+      }
+    ]
+  }
+}