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Improve ped handling #775

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Improve ped handling

Improve ped handling #775

Run time

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Job Run time
Run nf-test with pipeline_default-23.10.0
7m 45s
Run nf-test with pipeline_default-23.10.0
1m 15s
Run nf-test with pipeline_callers-23.10.0
7m 46s
Run nf-test with pipeline_callers-23.10.0
1m 15s
Run nf-test with pipeline_variations-23.10.0
7m 59s
Run nf-test with pipeline_variations-23.10.0
1m 17s
Run nf-test with pipeline_variations2-23.10.0
7m 47s
Run nf-test with pipeline_variations2-23.10.0
1m 16s
Run nf-test with pipeline_gvcfs-23.10.0
7m 58s
Run nf-test with pipeline_gvcfs-23.10.0
1m 15s
Run nf-test with cram_call_genotype_gatk4-23.10.0
8m 1s
Run nf-test with cram_call_genotype_gatk4-23.10.0
1m 15s
Run nf-test with cram_call_vardictjava-23.10.0
8m 0s
Run nf-test with cram_call_vardictjava-23.10.0
1m 15s
Run nf-test with cram_prepare_samtools_bedtools-23.10.0
5m 44s
Run nf-test with cram_prepare_samtools_bedtools-23.10.0
5m 44s
Run nf-test with input_split_bedtools-23.10.0
2m 59s
Run nf-test with input_split_bedtools-23.10.0
2m 59s
Run nf-test with vcf_annotation-23.10.0
5m 7s
Run nf-test with vcf_annotation-23.10.0
5m 7s
Run nf-test with vcf_extract_relate_somalier-23.10.0
4m 48s
Run nf-test with vcf_extract_relate_somalier-23.10.0
4m 48s
Run nf-test with vcf_ped_rtgtools-23.10.0
4m 26s
Run nf-test with vcf_ped_rtgtools-23.10.0
4m 26s
Run nf-test with vcf_upd_updio-23.10.0
5m 28s
Run nf-test with vcf_upd_updio-23.10.0
5m 28s
Run nf-test with vcf_validate_small_variants-23.10.0
7m 58s
Run nf-test with vcf_validate_small_variants-23.10.0
1m 9s
Run nf-test with pipeline_default-latest-everything
3m 24s
Run nf-test with pipeline_default-latest-everything
1m 15s
Run nf-test with pipeline_callers-latest-everything
6m 43s
Run nf-test with pipeline_callers-latest-everything
1m 16s
Run nf-test with pipeline_variations-latest-everything
6m 50s
Run nf-test with pipeline_variations-latest-everything
1m 12s
Run nf-test with pipeline_variations2-latest-everything
3m 31s
Run nf-test with pipeline_variations2-latest-everything
1m 11s
Run nf-test with pipeline_gvcfs-latest-everything
3m 26s
Run nf-test with pipeline_gvcfs-latest-everything
1m 15s
Run nf-test with cram_call_genotype_gatk4-latest-everything
7m 59s
Run nf-test with cram_call_genotype_gatk4-latest-everything
1m 16s
Run nf-test with cram_call_vardictjava-latest-everything
4m 36s
Run nf-test with cram_call_vardictjava-latest-everything
4m 36s
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
6m 27s
Run nf-test with cram_prepare_samtools_bedtools-latest-everything
6m 27s
Run nf-test with input_split_bedtools-latest-everything
4m 19s
Run nf-test with input_split_bedtools-latest-everything
4m 19s
Run nf-test with vcf_annotation-latest-everything
3m 7s
Run nf-test with vcf_annotation-latest-everything
1m 14s
Run nf-test with vcf_extract_relate_somalier-latest-everything
2m 59s
Run nf-test with vcf_extract_relate_somalier-latest-everything
1m 17s
Run nf-test with vcf_ped_rtgtools-latest-everything
1m 22s
Run nf-test with vcf_ped_rtgtools-latest-everything
1m 16s
Run nf-test with vcf_upd_updio-latest-everything
2m 25s
Run nf-test with vcf_upd_updio-latest-everything
1m 14s
Run nf-test with vcf_validate_small_variants-latest-everything
2m 22s
Run nf-test with vcf_validate_small_variants-latest-everything
1m 15s
3h 38m 48s