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    74 repositories

    • pca_kinship

      Public
      PCA & Kinship pipeline
      Python
      •
      MIT License
      •0•2•0•0•Updated Mar 13, 2025Mar 13, 2025

    • risteys

      Public
      Elixir
      •
      MIT License
      •0•5•74•0•Updated Mar 13, 2025Mar 13, 2025

    • coloc.susie.direct

      Public
      Colocalization on Susie results from FinnGen fine-mapping pipeline
      R
      •0•1•0•0•Updated Mar 13, 2025Mar 13, 2025

    • ROMOPAPI

      Public
      ROMOPAPI
      R
      •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • HadesExtras

      Public
      HadesExtras
      R
      •
      Other
      •0•0•3•0•Updated Mar 12, 2025Mar 12, 2025

    • pheweb

      Public
      A tool to build multi-phenotype GWAS browsers
      Python
      •
      MIT License
      •69•8•47•4•Updated Mar 11, 2025Mar 11, 2025

    • kanta_lab_preprocessing

      Public
      Repo for kanta lab QC
      Python
      •
      MIT License
      •0•1•1•0•Updated Mar 7, 2025Mar 7, 2025

    • CO2AnalysisModules

      Public
      R
      •
      Other
      •0•0•12•1•Updated Mar 6, 2025Mar 6, 2025

    • META_ANALYSIS

      Public
      Tools for doing x way meta-analysis
      Python
      •
      MIT License
      •14•9•5•3•Updated Mar 5, 2025Mar 5, 2025

    • qc_imputation

      Public
      Genotype QC and imputation pipeline
      WDL
      •
      MIT License
      •0•2•12•2•Updated Mar 5, 2025Mar 5, 2025

    • CohortOperations2

      Public
      R
      •
      Other
      •0•1•26•0•Updated Feb 19, 2025Feb 19, 2025

    • finemapping-pipeline

      Public
      Statistical fine-mapping pipeline in FinnGen
      WDL
      •
      MIT License
      •9•29•9•2•Updated Feb 19, 2025Feb 19, 2025

    • CS-PRS-pipeline

      Public
      PRS pipeline using PRS_CS
      Python
      •
      MIT License
      •0•13•2•0•Updated Feb 13, 2025Feb 13, 2025

    • LDSC

      Public
      Python
      •
      MIT License
      •2•3•1•0•Updated Feb 12, 2025Feb 12, 2025

    • kanta_lab_harmonisation_public

      Public
      R
      •
      MIT License
      •0•0•2•0•Updated Feb 7, 2025Feb 7, 2025

    • EunomiaDatasets

      Public
      Hosting of sample CDM datasets in CSV format for use in testing throughout the OHDSI community. Eunomia R package to manage the datasets can be accessed at https://github.com/OHDSI/Eunomia.
      Apache License 2.0
      •4•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • pan-ukbb-mapping

      Public
      Mapping between FinnGen phenotypes and Pan-UKBB phenotypes
      MIT License
      •0•1•1•0•Updated Jan 17, 2025Jan 17, 2025

    • ld_server

      Public
      Serve linkage disequilibrium
      Python
      •
      MIT License
      •0•4•2•0•Updated Jan 16, 2025Jan 16, 2025

    • autoreporting

      Public
      Python
      •
      MIT License
      •2•3•21•0•Updated Dec 23, 2024Dec 23, 2024

    • commons

      Public
      Workflows for FINNGEN data munging
      Python
      •
      MIT License
      •0•2•3•4•Updated Dec 9, 2024Dec 9, 2024

    • CO2DockerDemo

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • nmr

      Public
      Analysis of metabolomics/nmr data
      Python
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • HadesAnalysisModules

      Public
      HadesAnalysisModules
      HTML
      •
      Other
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • F3-task-force-general

      Public
      Sharing of task force related common code
      R
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • pheweb-colocalization

      Public
      pheweb colocalization
      Python
      •
      MIT License
      •0•0•3•0•Updated Oct 16, 2024Oct 16, 2024

    • regenie-pipelines

      Public
      WDL pipelines for running regenie
      WDL
      •
      MIT License
      •4•8•8•4•Updated Oct 9, 2024Oct 9, 2024

    • FinnGenUtilsR

      Public
      FinnGenUtilsR
      R
      •
      Other
      •0•3•1•0•Updated Sep 26, 2024Sep 26, 2024

    • ETL

      Public
      second version for the ETL of the detailed longitudinal data to the OMOP-CDM
      R
      •
      MIT License
      •0•0•19•0•Updated Sep 23, 2024Sep 23, 2024

    • CromwellInteract

      Public
      Python
      •
      MIT License
      •0•0•3•0•Updated Sep 9, 2024Sep 9, 2024

    • CohortOperationsViewer

      Public
      R
      •
      Other
      •0•0•3•3•Updated Aug 30, 2024Aug 30, 2024