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@GMOD Generic Model Organism Database Project

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    108 repositories

    • jbrowse-components

      Public
      Source code for JBrowse 2, a modern React-based genome browser
      visualizationbioinformaticsgenomicsjbrowse
      TypeScript
      •
      Apache License 2.0
      •72•261•276•28•Updated Nov 6, 2025Nov 6, 2025

    • Apollo3

      Public
      JBrowse 2 plugin for editing annotations on an Apollo server
      TypeScript
      •
      Apache License 2.0
      •7•12•67•4•Updated Nov 5, 2025Nov 5, 2025

    • proteinbrowser

      Public
      0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • jb2hubs

      Public
      JBrowse 2 genome hubs... for all the things!
      TypeScript
      •0•0•28•1•Updated Nov 4, 2025Nov 4, 2025

    • genomefeatures

      Public
      A D3 renderer for gene and variant features
      TypeScript
      •1•0•2•0•Updated Nov 4, 2025Nov 4, 2025

    • trix-js

      Public
      Read UCSC Trix indexes in pure JavaScript
      TypeScript
      •
      Apache License 2.0
      •2•0•1•2•Updated Nov 3, 2025Nov 3, 2025

    • indexedfasta-js

      Public
      Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
      TypeScript
      •
      MIT License
      •3•12•0•0•Updated Nov 3, 2025Nov 3, 2025

    • faidx-js

      Public
      Index a FASTA file similar to `samtools faidx` using pure js
      TypeScript
      •
      MIT License
      •0•2•0•0•Updated Nov 3, 2025Nov 3, 2025

    • cram-js

      Public
      Read CRAM v3 and v2 in node or in the browser
      genomics
      TypeScript
      •
      MIT License
      •8•18•8•1•Updated Nov 3, 2025Nov 3, 2025

    • bgzf-filehandle

      Public
      Nodejs filehandle for reading bgzip+.gzi compressed files
      TypeScript
      •
      MIT License
      •4•7•5•1•Updated Nov 3, 2025Nov 3, 2025

    • nclist-js

      Public
      Read JBrowse v1 nested containment list feature stores from modern JS
      TypeScript
      •
      MIT License
      •0•0•0•1•Updated Nov 3, 2025Nov 3, 2025

    • bbi-js

      Public
      Parser for bigwig and bigbed files
      TypeScript
      •
      MIT License
      •6•8•8•1•Updated Nov 3, 2025Nov 3, 2025

    • bam-js

      Public
      Parse BAM and BAM index files in javascript for node and the browser
      TypeScript
      •
      MIT License
      •9•24•8•3•Updated Nov 3, 2025Nov 3, 2025

    • tabix-js

      Public
      Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
      TypeScript
      •
      MIT License
      •4•14•2•0•Updated Nov 3, 2025Nov 3, 2025

    • g2p_mapper

      Public
      TypeScript
      •1•0•0•1•Updated Nov 3, 2025Nov 3, 2025

    • jbrowse-plugin-template

      Public template
      Template to quickly start a new JBrowse 2 plugin
      TypeScript
      •
      Apache License 2.0
      •1•7•17•3•Updated Nov 3, 2025Nov 3, 2025

    • jbrowse-plugin-list

      Public
      List of plugins for the JBrowse 2 plugin store.
      JavaScript
      •5•2•0•2•Updated Nov 3, 2025Nov 3, 2025

    • jbrowse-plugin-msaview

      Public
      multiple sequence alignment browser plugin for JBrowse 2
      TypeScript
      •
      Apache License 2.0
      •0•5•5•0•Updated Oct 27, 2025Oct 27, 2025

    • JBrowseMSA

      Public
      A multiple sequence alignment viewer
      TypeScript
      •
      MIT License
      •3•24•27•0•Updated Oct 26, 2025Oct 26, 2025

    • jbrowse-plugin-protein3d

      Public
      3D protein structure visualizer in jbrowse 2 - WIP
      TypeScript
      •0•0•7•1•Updated Oct 25, 2025Oct 25, 2025

    • vcf-js

      Public
      High performance Variant Call Format (VCF) parser in pure JavaScript
      TypeScript
      •
      MIT License
      •4•25•2•1•Updated Oct 21, 2025Oct 21, 2025

    • twobit-js

      Public
      Read .2bit files with pure JS. Works in node or webpack.
      TypeScript
      •
      MIT License
      •1•4•0•0•Updated Oct 21, 2025Oct 21, 2025

    • ixixx-js

      Public
      TypeScript
      •
      MIT License
      •2•3•1•1•Updated Oct 12, 2025Oct 12, 2025

    • gff-js

      Public
      parse and format streams of GFF3, for node or webpack
      genomics
      TypeScript
      •
      MIT License
      •5•10•0•1•Updated Oct 3, 2025Oct 3, 2025

    • generic-filehandle2

      Public
      modernization of the original generic-filehandle, no Buffer polyfill needed
      TypeScript
      •0•0•0•1•Updated Sep 10, 2025Sep 10, 2025

    • jbrowse-react-linear-genome-view-vite-demo

      Public
      TypeScript
      •1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • jbrowse-react-linear-genome-view-rsbuild-demo

      Public
      TypeScript
      •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • jbrowse-react-linear-genome-view-nextjs-demo

      Public
      TypeScript
      •1•1•1•0•Updated Jul 21, 2025Jul 21, 2025

    • jbrowse-react-linear-genome-view-farm-demo

      Public
      TypeScript
      •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • jbrowse-react-linear-genome-view-cra5-demo

      Public
      TypeScript
      •0•0•0•1•Updated Jul 21, 2025Jul 21, 2025