Repositories list

• epi-simulation

  Public
  in-dev space for building an R package for simulating disease transmission dynamics and observations

  HTML

  •

  MIT License

  •0•1•3•1•Updated Nov 3, 2025Nov 3, 2025

• ir_cube

  Public
  R

  •7•0•1•0•Updated Oct 31, 2025Oct 31, 2025

• conmat

  Public
  Create Contact Matrices from Population Data

  rpublic-healthinfectious-diseases+ 2contact-matricespopulation-data

  R

  •

  Other

  •5•20•31•7•Updated Oct 25, 2025Oct 25, 2025

• sdmtools

  Public
  Helper functions for workflows used in modelling species distributions

  R

  •

  Other

  •3•8•26•0•Updated Sep 24, 2025Sep 24, 2025

• vector_sdm_course

  Public
  R

  •

  Creative Commons Attribution 4.0 International

  •7•2•4•0•Updated Sep 24, 2025Sep 24, 2025

• vector_atlas_training_resources

  Public

  idem-lab/vector_atlas_training_resources’s past year of commit activity
  Hub for curated modelling & data training resources relevant to collaborators of the Vector Atlas.

  MIT License

  •0•4•0•0•Updated Sep 10, 2025Sep 10, 2025

• idpalette

  Public
  R

  •

  Other

  •1•5•2•0•Updated Aug 21, 2025Aug 21, 2025

• traveltime

  Public
  Create maps of the time to travel from a user-supplied set of locations

  timetraveltimetravel+ 1traveltime

  PostScript

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  Other

  •3•12•5•0•Updated Aug 11, 2025Aug 11, 2025

• epiwave

  Public
  lowest-level functional interface for GPreff

  R

  •

  Apache License 2.0

  •5•2•17•0•Updated Jul 7, 2025Jul 7, 2025

• epiwave.pipelines

  Public
  R

  •3•0•14•0•Updated Jul 7, 2025Jul 7, 2025

• epiwave.params

  Public
  Helper functions for building epidemiological parameter distributions

  R

  •0•0•1•0•Updated Jul 7, 2025Jul 7, 2025

• covid19_behaviour_australia

  Public
  R

  •0•0•1•0•Updated Apr 7, 2025Apr 7, 2025

• behaviour.change.analysis

  Public
  R

  •

  Other

  •0•0•3•0•Updated Mar 25, 2025Mar 25, 2025

• behavioral_survey_data_processing

  Public
  R

  •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

• va_training_spatial_pp_model

  Public
  R

  •

  MIT License

  •9•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• simulation_entomo_baci

  Public
  Basic simulation for teaching

  R

  •11•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• VA_training-infection_simulation

  Public
  Infections simulation for Vector Atlas trianing

  R

  •10•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• neuts2efficacy

  Public
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission

  R

  •

  MIT License

  •4•0•0•0•Updated Feb 19, 2025Feb 19, 2025

• map-ir-pipeline

  Public
  Prototype demonstration of stacked generalisation method used in https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000633#sec010

  R

  •2•4•36•2•Updated Jan 30, 2025Jan 30, 2025

• epiwave.mapping

  Public
  What the Package Does (One Line, Title Case)

  R

  •3•3•7•1•Updated Dec 20, 2024Dec 20, 2024

• .github

  Public
  1•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• vector_atlas_training_2024

  Public
  R

  •0•1•2•0•Updated Nov 29, 2024Nov 29, 2024

• anopheles_stephensi_expansion

  Public
  R

  •

  MIT License

  •1•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• syncomat

  Public
  Synthetically generated contact matrices for 200 countries using the R package conmat

  R

  •1•2•7•0•Updated Jul 23, 2024Jul 23, 2024

• idem-lab.r-universe.dev

  Public
  0•0•0•0•Updated May 31, 2024May 31, 2024

• conmat-paper

  Public
  Publication ideas for the conmat package

  0•0•0•0•Updated May 14, 2024May 14, 2024

• little-git-workshop

  Public
  0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• code-review

  Public
  Where we write notes and ideas for code review in the IDEM group

  1•0•2•0•Updated Feb 6, 2024Feb 6, 2024

• greta-dockerfiles

  Public
  Dockerfile

  •0•1•2•0•Updated Feb 6, 2024Feb 6, 2024

• sitassess-GPreff

  Public
  R

  •0•0•2•0•Updated Feb 2, 2024Feb 2, 2024