Merge pull request #68 from Pathogen-Genomics-Cymru/version-fix

Version fix

docker/Dockerfile.tbprofiler-0.9.8.1

@@ -3,6 +3,10 @@ FROM ubuntu:focal
 #copy the reference genome to pre-compute our index
 COPY resources/tuberculosis.fasta /data/tuberculosis.fasta
 
+ENV tbdb_version=a5e1d48 \
+    tbprofiler_version=6.2.1
+    TMPDIR="."
+
 #USER root
 WORKDIR /
 ENV TMPDIR="/data"
@@ -56,5 +60,3 @@ WORKDIR /data
 #wants full path to reference
 RUN tb-profiler update_tbdb --match_ref /data/tuberculosis.fasta --commit ${TBDB_VER}
 
-#set tmpdir to current working directory so we don't write to filesystem
-ENV TMPDIR="."

singularity/Singularity.tbprofiler-0.9.8.1

@@ -16,6 +16,10 @@ maintainer3.email="[email protected]"
 
 #copy the reference genome to pre-compute our index
 
+tbdb_version=a5e1d48
+tbprofiler_version=6.2.1
+    TMPDIR="."
+
 #USER root
 mkdir -p /
 cd /
@@ -64,13 +68,12 @@ cd /data
 #wants full path to reference
 tb-profiler update_tbdb --match_ref /data/tuberculosis.fasta --commit ${TBDB_VER}
 
-#set tmpdir to current working directory so we don't write to filesystem
-TMPDIR="."
 %environment
+export tbdb_version=a5e1d48
+export tbprofiler_version=6.2.1
 export TMPDIR="/data"
 export MAMBA_ROOT_PREFIX="/opt/conda"
 export PATH="/opt/conda/bin:${PATH}"
-export TMPDIR="."
 %runscript
 cd /data
 exec /bin/bash "$@"