io/read_metadata: Fix dtype for the index column #3284
joverlee521ci.yaml
on: pull_request
Matrix: pytest-cram
mypy
56s
pyright
13s
build-docs
/
build
2m 44s
check-docs
38s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
0s
Annotations
21 errors and 9 warnings
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test (python=3.9 biopython=1.80)
Process completed with exit code 1.
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test (python=3.9 biopython=1.82)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.9 biopython=1.82)
The operation was canceled.
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test (python=3.10 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.10 biopython=latest)
The operation was canceled.
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test (python=3.10 biopython=1.80)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.10 biopython=1.80)
The operation was canceled.
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test (python=3.11 biopython=1.80)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.11 biopython=1.80)
The operation was canceled.
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test (python=3.11 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.11 biopython=latest)
The operation was canceled.
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test (python=3.10 biopython=1.82)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.10 biopython=1.82)
The operation was canceled.
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test (python=3.11 biopython=1.82)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.11 biopython=1.82)
The operation was canceled.
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test (python=3.12 biopython=1.82)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.12 biopython=1.82)
The operation was canceled.
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test (python=3.9 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.9 biopython=latest)
The operation was canceled.
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test (python=3.12 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
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test (python=3.12 biopython=latest)
The operation was canceled.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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test (python=3.9 biopython=1.80)
Failed to save: Unable to reserve cache with key 2025-02-07-linux-64-augur-args-41b63b5-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1746/merge, Key: 2025-02-07-linux-64-augur-args-41b63b5-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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test (python=3.9 biopython=1.82)
Failed to save: Unable to reserve cache with key 2025-02-07-linux-64-augur-args-ec18f6c-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1746/merge, Key: 2025-02-07-linux-64-augur-args-ec18f6c-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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test (python=3.10 biopython=1.80)
Failed to save: Unable to reserve cache with key 2025-02-07-linux-64-augur-args-782e6c7-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1746/merge, Key: 2025-02-07-linux-64-augur-args-782e6c7-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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test (python=3.11 biopython=1.80)
Failed to save: Unable to reserve cache with key 2025-02-07-linux-64-augur-args-23ab9eb-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1746/merge, Key: 2025-02-07-linux-64-augur-args-23ab9eb-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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test (python=3.10 biopython=1.82)
Failed to save: Unable to reserve cache with key 2025-02-07-linux-64-augur-args-4090700-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1746/merge, Key: 2025-02-07-linux-64-augur-args-4090700-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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test (python=3.9 biopython=latest)
Failed to save: Unable to reserve cache with key 2025-02-07-linux-64-augur-args-33aa3e3-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1746/merge, Key: 2025-02-07-linux-64-augur-args-33aa3e3-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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Artifacts
Produced during runtime
| Name | Size | |
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output-avian-flu
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96.7 KB |
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output-dengue
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1.16 MB |
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output-ebola
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112 KB |
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output-lassa
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1.49 MB |
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output-measles
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3.87 MB |
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output-mpox
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12.8 MB |
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output-mumps
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340 KB |
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output-ncov
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716 KB |
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output-oropouche
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507 KB |
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output-rabies
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4.96 MB |
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output-rsv
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9.48 MB |
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output-seasonal-cov
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1.69 MB |
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output-seasonal-flu
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54.3 KB |
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output-tb
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5.02 MB |
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output-wnv
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181 KB |
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output-yellow-fever
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2.1 MB |
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output-zika
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746 KB |
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