Skip to content

Issues: nservant/HiC-Pro

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

176 Open 445 Closed
176 Open 445 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

The bed file is always one line less than the biases file.
#674 opened Mar 9, 2025 by oganesson76
Singularity image broken link
#673 opened Feb 28, 2025 by SomePersonSomeWhereInTheWorld
HiCPro_testdata
#672 opened Feb 28, 2025 by wencyuan
unknown "Terminated" when Running step "Combine R1/R2 alignment files"
#671 opened Feb 27, 2025 by MaybeBio
Urgent help: Error - Installation - config system not detected. Please (re) install HiC-Pro !
#670 opened Feb 14, 2025 by lscnsdad
test dataset
#667 opened Jan 8, 2025 by qixin271
1
hicpro2higlass error interchromosomal matrices
#666 opened Dec 26, 2024 by ToruOkadaOi
The interpreter of ice error
#665 opened Dec 26, 2024 by rysterzhu
hicpro2juicebox.sh error
#664 opened Dec 22, 2024 by lifan2022
matrix directory has all file sizes of zero
#663 opened Dec 13, 2024 by lilongjuan
Low pairing rate
#662 opened Dec 12, 2024 by jeremymsimon
proposed chimeric reads
#661 opened Nov 20, 2024 by ejc043
mergeSAM.py error
#660 opened Nov 19, 2024 by WanghcPKU
4
mergeSAM.py error
#659 opened Nov 19, 2024 by WanghcPKU
mergeSAM.py error
#658 opened Nov 19, 2024 by WanghcPKU
About the read pairing.
#657 opened Nov 15, 2024 by DontCareYaYa
Error in Hi-C Pro non processing all the files
#656 opened Nov 9, 2024 by robertferr
1
About Arima Hi-C Kit restiction.
#654 opened Nov 4, 2024 by DontCareYaYa
It seems that all the input files for mergeBAM.py are R2.
#653 opened Oct 24, 2024 by yangqihang1230
Allelic analysis HiC-Pro G2 genome not mapping
#652 opened Oct 19, 2024 by luckysardar
4
How can I generate a .hic contact matrix at the fragment level using Micro-C data?
#651 opened Oct 4, 2024 by hanshanmengqi
how to set temporary home directory
#650 opened Sep 17, 2024 by ahmedabbas811
1
mergeSAM.log error
#649 opened Sep 17, 2024 by hcsun1
7
what is the Dumped_Pairs files about
#648 opened Sep 12, 2024 by Hanjiangna
4
HiC-Pro_3.1.0 failed to trim 3' end of the unmapped reads?
#646 opened Sep 8, 2024 by ddzhang3
1
ProTip! Add no:assignee to see everything that’s not assigned.