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36 Open 24 Closed
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Issues list

New tables to hold PAINT-curated experimental GO annotations
#66 opened Feb 6, 2025 by dustine32
@dustine32
3
Output UniProt IDs as primary identifiers in IBA GAF generation
#65 opened Jan 29, 2025 by dustine32
@dustine32
5
Separate PAN-GO ontology and annotation data sets for PANTHER site enrichment
#63 opened Dec 11, 2024 by dustine32
@dustine32
1
Add do_not_annotate field to go_classification table
#61 opened Aug 8, 2024 by dustine32
@dustine32
1
Fix MGI reference ID parsing in update pipeline
#57 opened Nov 23, 2022 by dustine32
@dustine32
Annotation ids in go_aggregate table are not unique for qualifiers
#55 opened Dec 2, 2021 by mugitty
@dustine32 @mugitty
3
Improve logging during DB update query execution
#54 opened Sep 10, 2021 by dustine32
3 tasks
@dustine32
Publish README release notes for each IBA release
#53 opened Jun 2, 2021 by dustine32
5 tasks
@dustine32
3
Convert PAINT tool IBA XML to GAF
#52 opened Apr 29, 2021 by dustine32
4 tasks
@dustine32
3
Generate PAINT data as GPAD files
#49 opened Jan 6, 2021 by pgaudet
@dustine32
2
Standard test for detecting drastic changes in overrepresentation results
#48 opened May 13, 2020 by dustine32
@dustine32
Add date column to fullgo_version table to track DB load date
#47 opened May 13, 2020 by dustine32
@dustine32
2
Handle qualifiers for new GAF 2.2 spec
#45 opened Apr 8, 2020 by dustine32
@dustine32
12
Report stats comparing PAINT release versions
#43 opened Apr 3, 2020 by dustine32
@dustine32
4
Add the latest ‘PAINT curation status’ notes for each release/update
#42 opened Feb 20, 2020 by dustine32
@dustine32
Include paint_other.gaf in GO release GAF load
#41 opened Feb 6, 2020 by dustine32
@dustine32
3
Prevent leaf-specific IBA propagation if NOT qualifiers do not match
#39 opened Nov 5, 2019 by dustine32
@dustine32
5
Obsolete redundant IBDs on same node
#35 opened Sep 24, 2019 by dustine32
@dustine32
11
Create folder structure for versioning IBA GAF releases
#34 opened Sep 5, 2019 by dustine32
@dustine32
11
Integrate IBA GAF generation into GO pipeline
#33 opened Aug 29, 2019 by dustine32
8
Log paint annotation change counts for each update
#31 opened Jun 4, 2019 by dustine32
@dustine32
5
Prevent IBA propagation to leaves having conflicting qualifiers (NOT)
#30 opened Jun 4, 2019 by dustine32
@dustine32
2
Recording changes to paint annotations in comments
#28 opened Apr 10, 2019 by dustine32
5
Errors with identifiers
#26 opened Oct 4, 2018 by pgaudet
@dustine32
6
Maintain archive of genelist_agg table in Panther
#25 opened Oct 2, 2018 by dustine32
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