VSEARCH 2.13.7

Fixes a bug when generating consensus sequences.

VSEARCH 2.13.6

Added info about the cut command to the output of the help command.

This should have been version 2.14.1 as it is a minor fix for version 2.13.5 which should have been version 2.14.0.

VSEARCH 2.13.5

Added cut command to fragment sequences at restriction sites. Silenced output from the fastq_stats command if quiet option was given. Updated manual.

This should have been 2.14.0 as it is not just a bug fix, but adds new features.

VSEARCH 2.13.4

Added information about support for gzip- and bzip2-compressed input files to the output of the version command. Adapted source code for compilation on FreeBSD and NetBSD systems.

VSEARCH 2.13.3

Fix bug in FASTQ parsing introduced in version 2.13.2.

VSEARCH 2.13.1

Minor changes to the allowed options for each command. All commands now allow the log, quiet and threads options. If more than 1 thread is specified for commands that are not multi-threaded, a warning will be issued. Minor changes to the manual.

VSEARCH 2.13.0

Added the fastx_getseq, fastx_getseqs and fastx_getsubseq commands to extract sequences from a FASTA or FASTQ file based on their labels. Improved handling of ambiguous nucleotide symbols. Corrected behaviour of uchime_ref command with and options self and selfid. Strict detection of illegal options for each command.

VSEARCH 2.12.0

Take sequence abundance into account when computing consensus sequences or profiles after clustering. Warn when rereplicating sequences without abundance info. Guess offset 33 in more cases with fastq_chars. Stricter checking of option arguments and option combinations.

VSEARCH 2.11.1

Minor change to the handling of the weak_id and id options when using cluster_unoise.

VSEARCH 2.11.0

Added ability to trim and filter paired-end reads using the reverse option with the fastx_filter and fastq_filter commands. Added xee option to remove ee attributes from FASTA headers. Minor invisible improvement to the progress indicator.