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Contents

• How Life Works? The Rules of Biological Life on Earth
  • Annotated Publications
  • Biological and Biomedical Database Catalog
  • Trove-like Classifiers for Database Catalog
• How Life Can Be? The Alternate World of Artificial Lives and Intelligences
  • Annotated Publications
  • Tools: Digital Organisms Simulation Environment (DOSE)
• Computational and Statistical Tools for Research
  • Annotated Publications
  • Tools: Collection of Python Algorithms and Data Structures (COPADS)
  • Tools: Cyber Laboratory Notebook for Biologists and Bioinformaticists (CyNote)
  • Tools: Digital Organisms Simulation Environment (DOSE)
  • Tools: Hypergraph Database Management System (HygDAS)
  • Tools: Notarization Code Generator and Logging Service (NotaLogger)
  • Tools: Technical (Analysis) and Applied Statistics System (TAPPS)
  • Tools: A Toolbox for Studying Bacteria, Archaea, and Complex Taxons (Bactome)